Datasets
Here we provide a single table with all the links, size and md5 checksums for the publicly available files provided in the following tutorials.
Adult mouse hippocampus
| File |
Link |
md5 checksum |
| adult_hippocampus_tiles.tar.xz |
http |
3788d6774212d8eb50ffb17fc970c1c3 |
| adult_mouse_hippocampus.h5ad.tar.gz |
http |
833bd94d8901b6605fd41c22e5755e1c |
| adult_mouse_hippocampus_R1_001.fastq.gz |
http |
cff74ca79bfa645de31cee80f035b6fe |
| adult_mouse_hippocampus_R2_001.fastq.gz |
http |
4f3af67c09967ca6bdd9575a02692a4f |
| adult_mouse_hippocampus.tif |
http |
d23dba7f2eeb88c3de9fa869099b30dd |
E13 mouse head
| File |
Link |
md5 checksum |
| e13_mouse_head_tiles.tar.xz |
http |
a7f63b5049a8e06d9c3a37cab7af8205 |
| e13_mouse_head.h5ad.tar.gz |
http |
c727ec6d7b34bffd79919570ae5b4b6d |
| e13_mouse_head_R1_001.fastq.gz |
http |
92f291e2033bf71096836a239a49fc1e |
| e13_mouse_head_R2_001.fastq.gz |
http |
841e5a8fe667f247e6dc4bd9641a3cc8 |
| e13_mouse_head_reseq_R1_001.fastq.gz |
http |
43c8a107652022f6f675bbd761dc330d |
| e13_mouse_head_reseq_R2_001.fastq.gz |
http |
a6a7c0cb3c6626977444b43a9ba07450 |
| e13_mouse_head.tif |
http |
c7703951d2602d487d0336c7c50f49c6 |
Barcode spatial coordinates and coordinate systems
| File |
Link |
md5 checksum |
| fc_1_coordinate_system.csv |
http |
83016d6d9179b68dbfe07d1da01aa0c0 |
| fc_2_coordinate_system.csv |
http |
6da374f1d4b07b2d3c8c424e76fa8567 |
| fc_1_L3.fastq.gz |
http |
7ee4cc818708caa87401744ac9366732 |
| fc_2_L3.fastq.gz |
http |
67e2d95e9b17bc8ebdf9f315f9a09952 |
Genomes and annotations
| File |
Link |
md5 checksum |
| GRCm39vM30.genome.fa |
http |
f7e956ab58169c9b457c93bc7ecca0a2 |
| gencodevM30.annotation.gtf |
http |
de5e3b939daf633970582756f90c01df |
| phiX.fa |
http |
69a6c72e164d1a57c0f8cf375a246b0a |
| mouse.rRNA.fa |
http |
cbf1d516d570cf085c9d5a61ac1b97c5 |